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One Health

Elsevier BV

Preprints posted in the last 7 days, ranked by how well they match One Health's content profile, based on 29 papers previously published here. The average preprint has a 0.05% match score for this journal, so anything above that is already an above-average fit.

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Early assessment of potential airline-mediated importation risk during the 2026 DRC-Uganda Bundibugyo virus disease outbreak

Kinoshita, R.; Suzuki, M.; Yoneoka, D.

2026-06-09 public and global health 10.64898/2026.06.01.26354569 medRxiv
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During the 2026 Bundibugyo virus disease outbreak in the Democratic Republic of the Congo and Uganda, we projected potential airline-mediated importation risk using contemporary airline network and an externally calibrated Ebola importation hazard. Effective-distance analyses identified major international hub countries, including Belgium, France, South Africa, Kenya, and the United Arab Emirates, as higher-probability gateways within 30 days. These early projections provide a reproducible framework for real-time international situational awareness, while emphasizing that importation risk does not imply local transmission risk.

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Estimating Infectious Disease Importation Risk during the 2026 FIFA World Cup

Herrera-Diestra, J. L.; Bi, K.; Ptak, S.; Ertem, Z.; Al-amery, A.; Harris, M.; Meyers, L. A.

2026-06-04 public and global health 10.64898/2026.06.03.26354828 medRxiv
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Background. The 2026 FIFA World Cup will bring an estimated 1--5~million international visitors to 11~US host cities between June~11 and July~19, 2026---the largest tournament in history. Large-scale international gatherings accelerate importation of infectious diseases from diverse source populations. Advance estimation of importation risk is essential for public health preparedness and surveillance prioritization. Methods. We developed a Poisson importation framework applied to five diseases (dengue fever, influenza, malaria, measles, and pertussis) across the 11~US venue cities. Three nested travel models of increasing resolution were constructed: a baseline model using routine June~2024 arrival data; a World Cup--adjusted model incorporating projected visitor growth factors; and a schedule-driven model routing WC fans to specific cities based on match assignments. WHO incidence and BTS T-100 routing fractions were combined with Monte Carlo uncertainty propagation (5,000 Uniform draws on under-reporting and travel-while-infectious parameters) to yield median importation estimates with 95\% uncertainty intervals. Results. Dengue posed the highest importation risk at most venue cities under the schedule-driven model (median $\Lambda > 10$ expected importations from Brazil alone; 95\% uncertainty interval 5.9--33.1), robust across the full literature-supported parameter range; Atlanta was the exception, where malaria probability exceeded dengue, driven by direct travel from West and Central African nations. Influenza ranked second at most cities, coinciding with the Southern Hemisphere winter peak. Pertussis showed broad geographic spread but carries the widest relative uncertainty, as the assumed detection rate sits at the upper bound of the literature range. Background tourism accounted for the dominant share of total importation risk; the World Cup fan increment contributed approximately 8.3\% of projected arrivals for WC-qualified nations. Conclusions. This Poisson importation framework, built entirely from publicly available data, provides reproducible importation risk estimates for mass gathering events. The framework extends to additional diseases, cities, and gatherings, offering a transparent baseline complementary to proprietary modeling systems.

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Shifting patterns of importation risk of Bundibugyo Ebola virus disease to Europe under outbreak expansion scenarios

Fanelli, F.; Parino, F.; Poletto, C.; Colizza, V.

2026-06-04 public and global health 10.64898/2026.05.31.26354511 medRxiv
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The 2026 Bundibugyo Ebola outbreak in eastern Democratic Republic of the Congo (DRC) has already generated international spread to Uganda, raising concerns about further regional and international dissemination. Using International Air Transport Association origin-destination passenger flows, we assessed relative exposure to Ebola virus disease importation into Europe under six outbreak expansion scenarios reflecting plausible pathways of geographical spread, including cross-border transmission and amplification in highly connected regional capitals. Relative exposure patterns remained largely unchanged under localized transmission in eastern DRC and border-spillover scenarios. Expansion into South Sudan generated a first structural increase in importation pressure to Europe through the connectivity associated with Juba, while hypothetical amplification in Kampala, Kigali, and Kinshasa substantially increased importation pressure and reshaped exposure patterns across Europe. Across all scenarios, France, Italy, and the United Kingdom remained among the most exposed countries. Mobility-informed scenario analyses support preparedness as the geography of the outbreak evolves.

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Spatiotemporal Dynamics of Human Metapneumovirus and Potential Impact of Respiratory Syncytial Virus Interventions in the United States

Li, K.; Perniciaro, S.; Kwon, J.; Grubaugh, N. D.; Weinberger, D. M.; Pitzer, V. E.

2026-06-04 infectious diseases 10.64898/2026.06.01.26354616 medRxiv
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Human metapneumovirus (HMPV) causes acute lower respiratory infections, primarily affecting young children and older adults, with seasonal outbreaks peaking annually in March or April in the United States and other temperate regions in the Northern hemisphere. However, the factors driving HMPV seasonality in the United States remain poorly understood. We analyzed laboratory-confirmed HMPV cases and age-specific emergency department visits across 10 US regions, fitting an age-stratified dynamic transmission model to assess spatiotemporal patterns and investigate the influence of environmental variables and viral interference from RSV on HMPV transmission rates. We found that models incorporating climate variables into the transmission rate, including vapor pressure, precipitation, potential evapotranspiration, and minimum temperature, could not capture the timing of HMPV activity across all regions. Instead, HMPV timing was associated with RSV activity, with the HMPV transmission rate reduced in the presence of RSV. We showed that, unlike RSV, only models incorporating viral interference could reproduce the biennial pattern of HMPV observed in some regions, characterized by alternating late-small and early-large epidemics. Furthermore, our model successfully reproduced post-COVID-19 HMPV and RSV epidemics and predicted that RSV interventions are not likely to lead to a substantial increase in HMPV activity despite decreasing competition from RSV. Our work unravels the spatiotemporal dynamics of HMPV and its interaction with RSV, informing future seasonal forecasting and intervention strategies for HMPV.

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Multi-Pathogen Wastewater Surveillance enables Real-Time Targeted Public Health Interventions During the 2025 African Nations Championship Football Tournament

Nsawotebba, A.; Morunyanga, I.; Nakintu, V.; Kabazzi, J.; Magala, J.; Uragiwenimana, V.; Ssekyondwa, S.; Kasujja, R.; Onywera, H.; Hull, N.; Akejo, D. S.; Dambya, C.; Ikoba, S.; Baraka, V.; Tebeje, Y. K.; Barigye, E.; Cham, F.; Ssewanyana, I.; Nabaasa, H.; Muruta, A.; Olaro, C.; Atwine, D.; Nabadda, S.; Acheng, J. R.

2026-06-08 occupational and environmental health 10.64898/2026.06.05.26354973 medRxiv
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Mass gatherings pose significant public health risks by facilitating the spread of infectious diseases. While wastewater-based surveillance (WBS) has been widely used to monitor pathogens in high-income settings, its use as a practical, multi-pathogen surveillance tool during mass gatherings in low- and middle-income countries remains limited. This study aimed to assess the operational feasibility, epidemiological significance, and public health utility of multi-pathogen WBS during the African Nations Championship (CHAN) football tournament in Uganda. Wastewater surveillance was conducted at Mandela National Stadium during eight match days in August 2025. Moore swabs were deployed at 38 manholes receiving wastewater from different toilet facilities across the stadium to capture representative wastewater samples. Samples were processed using Nanotrap(R) microbiome virus particles to concentrate pathogens, followed by nucleic acid extraction. Samples were analyzed for multiple enteric and respiratory pathogens, including Mpox, using quantitative PCR (qPCR). Descriptive analyses were performed to characterize pathogen detection patterns, positivity rates, and temporal distribution across surveillance sites. A total of 304 wastewater samples were collected and analyzed, of which 259 (85.2%) tested positive for at least one pathogen. Multiple pathogens were consistently detected across sampling days, with enteric pathogens predominating, particularly Shigella spp. (53.6%), Rotavirus A (35.9%) and Enterovirus (32.2%). The mpox virus was also detected in a notable proportion of samples (28.6%) across several sampling days. Respiratory pathogens, including SARS-CoV-2 (11.8%) and Influenza B (8.2%), were identified intermittently at lower frequencies. Pathogen diversity varied over time, with up to eight pathogens detected on a single day, and co-detection of multiple pathogens observed in the majority of positive samples. Cq value distributions further demonstrated variability in detected signal patterns across pathogens. Surveillance findings informed real-time public health interventions, including sanitation reinforcement, intensified hygiene promotion, environmental disinfection, and targeted risk communication, strengthened syndromic surveillance with on-site triage, and targeted environmental health assessments of food handling and wastewater infrastructure. These findings demonstrate the operational feasibility and public health utility of integrating multi-pathogen wastewater-based surveillance into mass-gathering preparedness and response frameworks in low-resource settings. By capturing diverse pathogen signals and informing targeted interventions during the CHAN football tournament, WBS can provide actionable population-level insights that can support outbreak preparedness and response. Scaling WBS within national preparedness systems could strengthen epidemic intelligence, enhance early warning capacity, and support data-driven public health decision-making during future mass gatherings and emerging infectious disease threats.

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Insights from Wastewater Surveillance of SARS-CoV-2 in Skilled Nursing Facilities: Comparing Virus Concentration Methods for Wastewater and Correlating Wastewater Virus Concentrations with Clinical Infections, Georgia, USA, 2022

Whitehill, F.; Lyons, A. K.; Abera, B.; Adler, C.; Burgos-Garay, M.; Campbell, M.; Santiago, A. J.; Ganim, C.; Moore, J.; Cahela, Y.; Lenz, S.; Gable, P.; Medrzycki, M.; Walters, M. S.; Keaton, A.; Cook, P. W.; Li, Y.; Tao, Y.; Zhang, J.; Malapati, L.; Retchless, A. C.; Tong, S.; Williams, M.; Donlan, R.; Coulliette-Salmond, A.

2026-06-04 epidemiology 10.64898/2026.06.01.26354622 medRxiv
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To understand the utility of healthcare facility-level wastewater surveillance (WWS) for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), it is important to correlate wastewater SARS-CoV-2 RNA detection with the number of clinical infections. WWS for SARS-CoV-2 was performed at three skilled nursing facilities (SNFs) over 25 weeks. Electronegative membrane filtration (enMF) and Nanotrap(R) Magnetic Virus Particles (NP) virus concentration methods were compared. Extracts were tested by droplet digital polymerase chain reaction. Spearman's correlations ({rho}) between wastewater virus RNA concentrations and infection counts were calculated. From split wastewater samples, enMF recovered higher SARS-CoV-2 RNA concentrations than NP. Combining data from all facilities, the median concentrations were 53.0 versus 38.6 gc/100 mL for enMF and NP, respectively (p=0.001). Using enMF, correlations were moderate to strong at SNF A ({rho} ranged 0.67 to 0.86, all p-values <0.001). Weak to moderate correlations can be explained by the sampled manhole not representing the entire facility (SNF B, {rho} ranged 0.47 to 0.72, p-values ranged <0.001 to 0.12) and longitudinal data gaps from summer heat and equipment maintenance (SNF C, {rho} ranged 0.14 to 0.59, p-values ranged 0.52 to <0.01). WWS can be a valuable tool for tracking dynamics of SARS-CoV-2 infections in healthcare facilities.

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Spatial and temporal associations between animal ownership and malaria prevalence in Africa using cross-sectional national Demographic and Health Surveys

Topazian, H. M.; Morgan, C. E.; Goel, V.

2026-06-08 epidemiology 10.64898/2026.06.05.26355017 medRxiv
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Use of zooprophylaxis as a malaria control strategy has been recommended historically, but a complex relationship exists between animal ownership and malaria infection, with mixed associations described in the literature. We sought to characterize this relationship spatially and temporally in malaria-endemic regions of Africa. We used data from 392,843 individuals from 66 Demographic and Health surveys from countries within Africa to investigate the association between household animal ownership and Plasmodium infection. We used Bayesian models with Integrated Nested Laplace Approximation to incorporate spatially varying coefficient processes, allowing the association of interest to vary over space, time, and within strata of vector species occurrence, land cover, and number of animals owned by households. Spatially varying intercept models showed that ownership of cattle, chickens/poultry, goats, horses/donkeys/mules, pigs, and sheep was broadly associated with malaria infection, with odds ratios ranging from 1.55 to 1.67. However, spatially varying slope models revealed considerable heterogeneity, with odds ratio estimates for all animal types demonstrating both protective and harmful effects varying from 0.33 to 3.33 both subnationally and across time. We found no evidence that modification by vector species, number of animals owned, and land cover fully explained the variation in estimates. Unobserved localized cultural, behavioral, or ecological factors likely modify the association between animal ownership and malaria prevalence. Further exploring the nature of this relationship over space and time will be important to understanding how context-specific One Health dynamics between humans, animals and the environment affect malaria prevention and control efforts.

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Limitations of cross-border containment strategies for Bundibugyo ebolavirus

Middleton, C.; Larremore, D.

2026-06-08 epidemiology 10.64898/2026.06.04.26354820 medRxiv
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An ongoing outbreak of Bundibugyo virus disease (BVD) in the Democratic Republic of the Congo was deemed a public health emergency of international concern in May 2026. To prevent cross-border importation, many countries, including the United States, Canada, India, Thailand, and Kenya have already proposed containment strategies, and others are likely to follow suit. How well (or poorly) are screening and quarantine containment measures are likely to work? We leverage established epidemiological theory and develop a mathematical model of traveler screening and post-arrival quarantine for BVD to answer this question. We find that traveler screening via symptom screening or molecular testing will miss the majority of infected travelers, and should be complemented by post-arrival quarantine and monitoring of sufficient duration to detect those with long incubation periods. Our findings underscore the limitations of border screening and the importance of complementary measures like post-arrival quarantine to prevent local importation of BVD.

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Comparison of the Mini Parasep SF, ParaPak SpinCon, and Paradevice fecal filtration and concentration devices for microscopic and AI-assisted detection of intestinal parasites

Morris, H.; Pritt, B. S.

2026-06-04 infectious diseases 10.64898/2026.06.02.26354769 medRxiv
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Effective filtration and concentration of stool specimens is an essential pre-analytical step for reducing fecal debris and improving organism recovery using microscopy-based ova and parasite (O&P) examination. This study evaluated three commercially available fecal sedimentation-based filtration/concentration systems, ParaPak SpinCon (Meridian Bioscience), Mini Parasep SF (Apacor), and the newly-available ParadeviceReingenuity), for qualitative parasite detection and workflow logistics using conventional and artificial intelligence (AI)-assisted microscopy. Forty clinical stool specimens (20 parasite-positive and 20 parasite-negative) were processed with the 3 devices, and the resultant 120 wet mount and 120 trichrome stained smear preparations were examined using conventional microscopy. Trichrome-stained slides were also scanned at 40x magnification using a Hamamatsu NanoZoomerS360 flatbed digital slide scanner and images were analyzed using the Techcyte Fusion Human Fecal Trichrome AI algorithm. Positive and indeterminate digital findings were confirmed by conventional glass slide microscopy. Slides and digital images were reviewed in a blinded manner. Concordance was assessed among the 360 initial evaluations (microscopy and AI-assisted), and discrepant parasitology results were resolved through re-review and specimen reprocessing as needed. Final qualitative agreement across slide/image evaluations using all three concentration systems was 100%. Minor discrepancies in protozoan and white/red blood cell detection/identification were noted in 5 and 7 cases, respectively, and likely reflected sampling and observer variability. While the three concentration systems produced equivalent qualitative results, the Paradevice and Mini Parasep SF offered the most streamlined workflows. These findings support the Paradevice and Mini Parasep SF as efficient, analytically equivalent systems that are compatible with traditional and AI-assisted O&P workflows.

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Temporal and climatic drivers of uncomplicated malaria in Ghana: A Region Generalised Additive Model analysis.

Akurugu, E.; Awine, T.; Seidu, B.; Peprah, N. Y.; Mohammed, W.; Boateng, P.; Abiwu, P. H. A. K.; Silal, S. P.

2026-06-09 infectious diseases 10.64898/2026.06.06.26355054 medRxiv
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Abstract Background Malaria remains a major public health challenge in Ghana, despite recent reductions in cases due to various interventions. The endemicity of the disease varies across regions, influenced by diverse seasonal and temporal factors that support mosquito proliferation and malaria cases. This study used a Generalised Additive Models to explore the impact of weather conditions on malaria cases in Ghana. Methods Generalised Additive Models were used to examine the nonlinear effects of weather conditions on malaria cases. Monthly aggregated malaria cases from the District Health Information Management System II and average monthly rainfall and temperature data from the Ghana Meteorological Agency were analysed, covering 2012 to 2023. Regional Generalised Additive Models incorporating weather variables were developed, fitted, and validated against observed data using model diagnostics to identify the most suitable model for each region. Results The analysis revealed complex temporal patterns in malaria cases across Ghana, influenced by seasonal and long-term trends. Regions constituting the Coastal and Transitional Forest zones exhibited bimodal peak malaria seasons, while the Guinea Savannah showed a unimodal peak. Significant interactions between rainfall and temperature were identified, particularly in the Eastern region, where higher rainfall combined with temperatures around 27-28 {degrees}C were associated with higher malaria cases, reflecting the complex and region-specific nature of meteorological influences. Conclusions The findings point to the dynamic and heterogeneous nature of malaria caseloads in Ghana, emphasising the need for region-specific control strategies tailored to local climatic conditions. A key recommendation is the systematic integration of meteorological data into the National Malaria Data Repository to enable continuous monitoring of climatic influences and support timely, evidence-based intervention decisions. Future research should incorporate socio-economic factors, intervention coverage data, vector surveillance, and demographic characteristics into mathematical modelling frameworks for a more comprehensive understanding of malaria cases in Ghana.

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Seasonality, source type, and women's water labor: A longitudinal mixed-methods study in Kenya and Honduras

Mink, T.; Ogutu, E.; Patrick, M.; Sinharoy, S.; Bolanos Gamez, M. V.; Macler, A.; Ngo, C. P.; Oglesby, H.; Bendit, O.; White, J.; Antonio, S.; Ramos, G.; Roldan Medina Lopez, E.; Atandi, E.; Mwangi, P.; Koome, P.; Otieno Onyango, R.; Otuya, P. A.; Ruto, P.; Caruso, B. A.

2026-06-10 public and global health 10.64898/2026.06.09.26355008 medRxiv
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Women shoulder the majority of water collection labor globally, yet how their water collection and water-related work experiences may change over time or by water source type remains insufficiently understood. We conducted a longitudinal, mixed-methods study in rural Kenya and Honduras to understand how women's experiences collecting water and performing water-related work varied between (a) two time points, (b) improved and unimproved water source types, and (c) water source location. Data were collected in 2023 and 2024 using interviews, observation, GPS-enabled watches, and scales to measure time and distance traveled, water weight and volume carried, and calories expended. 133 women participated in data collection (66 Kenya, 67 Honduras). We compared women's experience data by time point (2023 vs. 2024), source type (improved vs. unimproved), and source location (off-premises vs. on-premises) (t-test, Mann-Whitney U test). We also mapped participants' routes and activities to show which sources were visited, when, and for what activities. In Kenya, mean water collection time, distance, and caloric expenditure were significantly lower and water volume was significantly higher in 2024 when there were unexpected rains compared to 2023 when there was a persistent drought. When comparing source types during the 2023 drought, journeys to improved sources took significantly less time and energy and covered less distance than journeys to unimproved sources. These differences were not observed during the rainy conditions of 2024 when unimproved sources were closer and more accessible. In Honduras, water collection and water work burdens did not differ significantly by time point or source type. We found women with on-premises water access to still expend considerable time and caloric expenditure engaging in water work within their household compounds. Findings from Kenya suggest that water infrastructure improvements can reduce women's water collection burdens, though benefits may depend on and vary by season and source location. Findings from Honduras show that water labor does not end once water is in the household. Rather, substantial time and energy are expended carrying out water-related work even when sources are on premises, suggesting that efforts to assess water labor need to extend beyond collection alone. To meaningfully reduce burdens and ensure improved water sources are utilized during all seasons, initiatives need to consider source location, seasonal variability, and work beyond collection. Evaluations to assess infrastructure impacts on women's labor and well-being are needed and long overdue.

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Predictors of Road Safety behaviors among Boda-Boda Operators and their passengers in Kampala: A Mixed-Methods Study

Ainembabazi, R.; Kimuli, D.; Murami, T.; Wafula, S. T.; mgeyi, E.; Kwesiga, J. B.; Kibingo, P.; Mugumya, I.; Atulomah, N. O.; Nsubuga, D.

2026-06-07 public and global health 10.64898/2026.05.29.26354085 medRxiv
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Background Despite existing road safety regulations, commercial motorcycle riders commonly referred to as "Boda Bodas" in Uganda continue to experience high rates of injuries due to road traffic accidents resulting from unsafe riding behaviours, contributing significantly to morbidity and mortality among both riders and passengers. Safe riding behaviours are less well documented, as well as factors associated with the observance of those behaviours. This study aimed to determine factors associated with safe riding behaviors for both boda-boda riders and their passengers in Kampala Central Division. Methods A cross-sectional survey study design was conducted using a convergent parallel mixed-methods design guided by the PRECEDE model. Quantitative data were collected from 424 riders through structured questionnaires administered by trained research assistants. Binary Logistic regression was used to determine the independent predictors of safe road riding behaviors, and Adjusted Odds ratios (AORs) have been reported. Data were analyzed using descriptive and inferential statistics, with a p-value <0.05 considered statistically significant. Qualitative data were collected simultaneously with quantitative data through in-depth semi-structured interviews with 10 passengers to capture perceptions of rider behaviors and safety practices. Thematic analysis was applied, and results were triangulated to highlight convergences and divergences between quantitative and qualitative findings, providing a comprehensive understanding of safety determinants for both riders and passengers. Results Of the 424 riders (mean rider age was 29.56 {+/-} 5.71), overall, 276 (65.1%) of riders exhibited unsafe riding behaviors. In the bivariate analysis with Logistic regression, predisposing factors (education, marital status, religion, and willingness to obey traffic regulations), and reinforcing factors (family encouragement) were significantly associated with safe riding behaviors. However, in the adjusted model, secondary (AOR=0.50; 95% CI:0.30-0.85) and post-secondary education (AOR=0.57; 95% CI:0.33-0.98), being married (AOR=0.56; 95% CI:0.34-0.91), Christian religion (AOR=2.98; 95% CI:1.63-5.47), willingness to obey traffic regulations (AOR=0.41; 95% CI:0.24-0.70), union advocacy (AOR=1.76; 95% CI:1.03-3.01), and well-maintained roads (AOR=1.65; 95% CI:1.07-2.55) were significant predictors of safe riding behaviors. Qualitative interviews further highlighted barriers to safety, including a lack of helmets, over-speeding, disregard for traffic regulations, and poor road infrastructure. Conclusions Rider and passenger safety is still low, interdependent, and influenced by multiple factors. Integrated interventions focusing on education, stronger families, religious affiliations, union safety advocacy, and stricter enforcement of traffic regulations are vital for enhancing safety for both riders and passengers.

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Modeling the Impact of Pediatric RSV Immunization in Massachusetts, 2024--2025

Jones, L.; Ergas, R.; Tibbs, A.; Russo, E. T.; Norville, J.; Bingay, B.; Brown, C. M.; Reich, N. G.; Pasco, R.

2026-06-10 epidemiology 10.64898/2026.06.05.26354236 medRxiv
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Background Pediatric immunizations for Respiratory Syncytial Virus (RSV), including monoclonal antibodies for infants and vaccines for pregnant people, have become broadly available and can prevent severe RSV outcomes in infants. However, quantifying the impact of RSV immunization in prevention of severe pediatric illness at the population-level is limited by lack of RSV case surveillance data. The Massachusetts Department of Public Health (DPH) conducted a modeling analysis using routine public health surveillance data to estimate the state-level impact of new RSV immunization products on Emergency Department (ED) visits and hospitalizations in Massachusetts for highest risk pediatric groups. Methods A scenario projection tool, called R.Scenario.Vax, was utilized to simulate RSV-associated ED hospital encounters by age group in the context of newly available immunizations. ED visit and hospitalization data from the National Syndromic Surveillance Program (NSSP) during the time period 10/08/2017--10/19/2024 were analyzed, scaled to account for changes in RSV testing practices over time and missing encounter volume in historic data, and utilized to inform model fit of a "typical" RSV season. RSV immunization data from the Massachusetts Immunization Information System (MIIS) for the 2023--2024 and 2024--2025 RSV seasons informed high and moderate pediatric RSV immunization coverage scenarios and their impact was compared to a counterfactual reference scenario of no new immunizations. Median projections were quantitatively and qualitatively compared to observed 2024--2025 season data. Percent reduction in hospital encounters and encounters averted per 10,000 population were calculated for each scenario as compared to the reference. Results Projections for the youngest at-risk age groups showed significantly lower RSV-associated ED visits and hospitalizations during the 2024--2025 season for both high and moderate immunization coverage scenarios. Median projections for infants under 6 months old in the highest coverage scenario, wherein nearly all infants were immunized, showed 72.6% lower ED visits and 73.4% lower hospitalizations when compared to the reference scenario, equating to 262 ED visits and 85 hospitalizations averted per 10,000 population. Conclusions Our results support the use of modeling methods for public health insights and suggest that RSV immunizations for infant populations result in significantly lower RSV-related ED encounters in Massachusetts.

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KESOZI Digital Twin: Physics-Informed Neural Network for Independent Estimation and Prediction of Childhood Diarrheal Disease Burden in Kenya, Somaliland, and Zimbabwe

KESOZI Digital Twin, ; Agumba, J. O.; Namusonge, L.; Ogendo, J.; Hassan, M. A.; Pembere, A.; Takavarasha, M.

2026-06-04 epidemiology 10.64898/2026.06.03.26354823 medRxiv
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Childhood diarrheal disease remains a leading cause of morbidity and mortality among children under five years in sub-Saharan Africa, particularly in settings affected by inadequate sanitation, climate variability, malnutrition, and limited healthcare access. Conventional forecasting approaches are often constrained by sparse surveillance data, weak spatial representation, and limited incorporation of mechanistic disease dynamics. This study presents a Physics-Informed Multimodal Artificial Intelligence Digital Twin framework that integrates Physics-Informed Neural Networks, Graph Neural Networks, diffusion-reaction epidemiological modeling, multimodal fusion learning, and Digital Twin simulation to estimate and predict childhood diarrheal disease burden in Kenya, Somaliland, and Zimbabwe. Using public epidemiological, environmental, climate, sanitation, and synthetic proof-of-concept datasets, the framework modeled temporal disease dynamics, spatial transmission, pathogen-attributed burden, and outbreak trajectories while enforcing epidemiological consistency through physics-informed optimization. Results demonstrated robust forecasting performance, enhanced spatial transmission modeling, uncertainty-aware predictions, and realistic outbreak simulations across the three countries. Rotavirus, Shigella, and Cryptosporidium were identified as major contributors to modeled mortality burden, while unsafe water exposure, poor sanitation, malnutrition, and climate-sensitive transmission substantially increased disease risk. Compared with a Bayesian baseline model, the multimodal framework achieved superior nonlinear risk characterization, geospatial learning, and temporal prediction. These findings highlight the potential of scientific machine learning and digital twin systems for infectious disease surveillance, outbreak forecasting, climate-health analytics, and evidence-based public health decision-making in low-resource African settings. Keywords: Physics-Informed Neural Networks, Graph Neural Networks, Digital Twin, Childhood Diarrheal Disease, Epidemiology, Kenya, Somaliland, Zimbabwe, Scientific Machine Learning, Spatial Epidemiology, Multimodal Fusion

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Serological Markers Predict Plasmodium vivax Relapses in Returning Indonesian Soldier Cohorts

Noviyanti, R.; Setya Utami, R. A.; Smith, L.; Trianty, L.; Ekawati, L.; Sutanto, E.; Amalia, R.; Amelia, A. R.; Hafidzah, M. A.; Fadila, N.; Puspitasari, A. M.; Nisa, F. A.; Hidar, H.; Kariodimedjo, P.; Farinisia, A.; Hutahaean, G.; Christian, M.; Kesuma, T. A.; Subekti, D.; Soebianto, S.; Wulandari, F.; Nuraeni, N.; Budiman, W.; Ertanto, Y.; Widiarta, M. D.; Furkan, F.; Nekkab, N.; Mazhari, R.; White, M.; Robinson, L.; Longley, R.; Baird, J. K.; Mueller, I.

2026-06-10 infectious diseases 10.64898/2026.06.08.26355218 medRxiv
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Summary Background Persistent transmission from relapsing Plasmodium vivax infections threatens malaria elimination programs in the Asia-Pacific and Americas. Tools to identify people at risk of relapse are urgently required. We aimed to validate a panel of eight P. vivax serological biomarkers for predicting future relapses. Methods In this observational study, soldiers returning from malaria-endemic Papua to non-endemic East Java, Indonesia, were screened at enrolment using antibody measurement (Luminex) and trained random forest classification algorithms, then followed for 6 months. Active case detection was performed fortnightly by microscopy. Algorithms classified soldiers as recently infected (last nine months) and thus at risk of relapse, based on anti-vivax antibody measurements at enrolment. Findings Between December 2018 and July 2022, 592 soldiers were enrolled, with 553 completing follow-up; 119 experienced a P. vivax relapse. Of these, 102 were correctly classified as at risk of relapse at enrolment, corresponding to 86% sensitivity and 86% specificity, with an AUC of 0.92. Interpretation P. vivax serological biomarkers can identify people at risk of relapse with high sensitivity and specificity and could be used as a novel public health intervention, P. vivax serological testing and treatment (PvSeroTAT), to reduce relapse-driven transmission.

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Improved water access may not reduce women's time burdens: Evidence from Kenya and Honduras

Sinharoy, S.; Mink, T.; Ogutu, E. A.; Patrick, M.; Nuncio, M. d. C. A.; Bolanos Gamez, M. V.; Oglesby, H.; Ngo, C. P.; Antonio, S.; Medina Lopez, E. R.; Mwangi, P.; Koome, P.; Otuya, P. A.; Ruto, P.; Otieno Onyango, R.; Caruso, B. A.

2026-06-04 public and global health 10.64898/2026.06.03.26354805 medRxiv
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Women's disproportionate responsibility for unpaid domestic and care work, including water collection, remains a barrier to gender equality globally and may constrain women's ability to engage in income-generating activities. We compared women's and men's time use in rural Kenya and Honduras and assessed whether women's time spent on water collection and income-generating activities differed between communities that had or had not received an improved water source from World Vision. We also examined the measurement of time-use agency among women and men. In-person surveys were conducted in July-August 2024 with 95 participants (48 women, 47 men) in six Kenyan communities and 102 participants (53 women, 49 men) in six Honduran communities. Surveys included a 24-hour time-use recall module and items on time-use agency. Analyses compared time use by gender and by community intervention status (improved vs. not yet improved water supply), and confirmatory factor analysis assessed the validity of the time-use agency measure. Women in both study sites spent substantially more time than men on unpaid domestic and care work activities, including cooking, cleaning, laundry, and caregiving. In Kenya, women also spent significantly more time collecting water. Men spent more time sleeping (Kenya), on paid work (Honduras), unpaid agricultural work (both settings), and traveling (both settings). Across both countries, there were no significant differences between intervention and comparison communities in women's time spent on water collection or income-generating activities. In Kenya, most respondents reported high influence over their time, and six items showed strong validity for measuring instrumental time-use agency. Women's time burdens remained high even in communities that had received improved water sources, including at the household level. Our results suggest that more transformative water infrastructure, combined with interventions that address gendered social norms, may be needed to meaningfully reduce women's domestic work burden and support their economic empowerment.

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A New Mixed Frequency Regression Model For Environmental Epidemiology

Shukla, N.; Bartington, S. E.; Hansell, A. L.; Lucas, T. C.

2026-06-04 epidemiology 10.64898/2026.06.03.26354801 medRxiv
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Background: In the absence of high-resolution response data, exposure-response modelling often relies on aggregated low-frequency exposure data, leading to loss of high-resolution information. Mixed Data Sampling (MIDAS) from econometrics offers an alternative but is limited due to its inability to make high-resolution predictions, inflexible likelihoods and penalised nonlinear functions, and limited visualization options. We propose a mixed-frequency Distributed Lag Non-linear Model (mf-DLNM) which can eliminate the need to aggregate exposure data in environmental epidemiology and provide high resolution predictions for time series studies. Methods: We evaluated the inference and predictive performance of the mf-DLNM. To evaluate its ability to estimate exposure-response relationships, we applied mf-DLNM and same-frequency (sf)-DLNM using data from the West Midlands, UK. Additionally, we compared the predictive performance of mf-DLNM with sf-DLNM and MIDAS across nine regions of England. As MIDAS cannot predict at the resolution of the predictor (daily), we compared the predictive performance of mf-DLNM and MIDAS at weekly resolution. To test the model's ability to predict high temporal resolution risk (daily), we compared sf-DLNM (with access to daily mortality counts) with mf-DLNM (with access only to weekly mortality counts). Results: In the West Midlands example, mf-DLNM performed comparably to sf-DLNM in estimating daily risk of temperature on respiratory mortality. Furthermore, mf-DLNM and MIDAS exhibited similar performance for weekly predictions. For high-resolution predictions, mf-DLNM and sf-DLNM showed nearly similar performance, despite mf-DLNM having access only to low-resolution response data. Conclusion: This mixed-frequency approach in environmental epidemiology overcomes the limitations of predicting health risks using aggregated exposure data and provides estimates of high-resolution outcomes in the absence of high-frequency health outcome datasets.

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Assessing the impact of absence of coordination in malaria intervention strategies: a modelling study

Iggidr, Y.; Ruktanonchai, N. W.; Benhana, B.; Turbe, V.; Bauzile, B.; Ward, A.; Cohen, J.; Pothin, E.; Champagne, C.

2026-06-05 epidemiology 10.64898/2026.06.03.26354857 medRxiv
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Malaria control programs are increasingly tailored at subnational scales; however, neighboring areas remain connected through human mobility, allowing parasite importation that may undermine independently timed interventions. Although the spatial targeting of control has been the focus of extensive research, the epidemiological consequences of temporal misalignment in intervention deployment across interconnected regions remain to be elucidated. We investigate how asynchronous timing of malaria interventions affects transmission dynamics using a two-patch susceptible-infected-susceptible metapopulation model. We compare synchronous and asynchronous intervention schedules and quantify their impact using measures of excess cumulative incidence attributable to asynchrony. The measure that will be used for this purpose is referred to as Asynchrony Induced Growth (AIG). Across a range of 10,000 parameter combinations, asynchronous implementation has been observed to result in a heightened incidence compared to synchronized deployment, though the impact is typically negligible in most endemic settings. Sensitivity analyses indicate that the impact is most significant when interventions are highly effective, infectious duration is brief, and transmission intensity approaches the elimination threshold. In such circumstances, asynchrony has the potential to substantially inflate case numbers, delay transmission interruption, or even prevent elimination entirely. In illustrative scenarios that reflect realistic settings, synchronizing interventions has been shown to avert large numbers of infections and shorten elimination timelines by years to decades. These findings demonstrate that, beyond spatial targeting, temporal coordination of interventions across connected areas can meaningfully enhance malaria control and elimination. Coordinated timing may be particularly valuable for cross-border or near-elimination programs and should be considered in operational planning and resource allocation.

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Burden of Chronic Kidney Disease in China, 1990-2021: Findings from the 2021 Global Burden of Disease Study

Wang, M.; Zhao, T.; Wang, H.; Hou, S.; Fu, Y.

2026-06-09 epidemiology 10.64898/2026.06.06.26355056 medRxiv
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Introduction: To investigate the epidemiological characteristics of chronic kidney diseases (CKD) in China in 2021 and its trends between 1990 and 2021, in the context of significant population growth and lifestyle changes over the past 30 years that have likely influenced the CKD spectrum. Methods: Data on CKD prevalence, mortality, disability-adjusted life-years (DALY), and risk factors were obtained from the Global Burden of Disease Study 2021. The estimated decadal percentage changes were calculated to evaluate changes in trends in prevalence, mortality and disease burden. Results: In 2021, an estimated 118.4 (95% UI 109.4 to 127.5) million people in China were affected by CKD, contributing to 204 230 (95% UI 164 736 to 246 372) deaths and 6.13 (95% UI 5.18 to 7.21) million DALY. Although CKD due to diabetes mellitus and hypertension accounted for less than a quarter of all cases, they were responsible for over 90% of CKD-related deaths. Over the past three decades, CKD mortality and DALY rates have steadily increased, although the prevalence has stabilized in the last decade. Diabetes mellitus type 2 and hypertension have emerged as key drivers of CKD burden in China. Conclusions: The CKD burden in China shows a dual pattern of rising incidence and high mortality from diabetes and hypertension-related chronic kidney disease, alongside persistently high years lived with disability from glomerulonephritis and other causes.

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Efficacy of test and treat with doxycycline on palpable nodules, microfilarial load and Wolbachia density in onchocerciasis infected persons in communities with persistent transmission in South-West Cameroon

Forrer, A.; Obie, E. D.; Bong, R. A.; Ekanya, R.; Njouendou, A. J.; Nji, T. M.; Amuam, A.; Eyong, E. M.; Ndzeshang, B. L.; Nkimbeng, D. A.; Fombad, F. F.; Teghen, S.; Suireng, A.; Ashu, E. E.; Hamill, L.; Enyong, P.; Turner, J. D.; Wanji, S.; Taylor, M. J.

2026-06-10 infectious diseases 10.64898/2026.06.09.26355259 medRxiv
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Abstract Introduction Onchocerciasis is targeted for elimination with community-directed treatment with ivermectin (CDTI). Alternative strategies are needed in areas where transmission persists despite long-term CDTI and/or are co-endemic with loiasis. This study assessed the efficacy of 35-day treatment with 100mg doxycycline on Wolbachia density at 6 months and microfilaridermia and palpable nodules at 30 months post-treatment. Methods A treatment follow-up study was conducted in 20 high-transmission onchocerciasis communities in a co-endemic loiasis area of South-West Cameroon. Community-based directly observed treatment with 100mg doxycycline was administered to community members aged [&ge;]9 years. Wolbachia clearance at 6-months and treatment efficacy on microfilaridermia and palpable nodules were assessed at 30-months post treatment. Factors associated with reductions in microfilaridermia post treatment, including adherence to doxycycline treatment were assessed with mixed-effects logistic regression. Results Over 92% (2835/3080) of eligible participants took 35 days of 100mg doxycycline over 5 or 6 weeks. This regimen achieved a 62.8% microfilaridermia reduction and 99% palpable nodule reduction in the 720 participants included at follow-up. Wolbachia depletion was observed in 92% of skin samples at 6 months post treatment. The most important factor associated with microfilaridermia after 30 months was having missed at least 7 doxycycline consecutive doses (OR 3.11, 95%CI: 1.17-8.26). Incomplete treatment to a lesser extent was not associated with reduced efficacy at follow-up. Conclusion This large-scale community intervention shows that a 5-week treatment with 100mg doxycycline is feasible and has high curative efficacy against adult O. volvulus as measured by the dramatic reduction in the proportion of palpable nodules at 30-months post treatment. The high efficacy shows the tremendous potential of anti-Wolbachia drugs as part of the arsenal for onchocerciasis elimination and paves the way for the next generation of anti-Wolbachia drugs with shorter treatment courses, which will facilitate the implementation of alternative strategies to accelerate onchocerciasis elimination.